HMPDACC Data Browser

The HMP DACC Data Portal provides access to all publicly available HMP data sets. If this is your first time to this page, please read the Tour Guide to HMP Sequence Data and the HMP Sample Flow Schematic.

View Data in the new Interactive Flowchart Data Flow Chart PDF

Reference Genomes
HMRGD HMP Reference Genome sequence data
HMREFG Reference genome database for read mapping
Most Wanted Taxa
HMMDA16S Single cell MDA 16S rRNA Sanger sequencing
HMP reference genome data at NCBI

Metagenomic 16S Sequence
HMR16S Raw 16S reads and library metadata
HM16STR Processed, annotated 16S
HMMCP Mothur community profiling
HMQCP QIIME community profiling
HMP metagenomic 16S data at NCBI

Metagenomic Shotgun Sequence
HMIWGS/HMASM Illumina wgs reads and assemblies
HMBSA Body-site specific assemblies
HMGI Gene Index
HMGC Clustered gene index
HMGS GO slim analysis
HMSCP Shotgun community profiling
HMSMCP Shotgun MetaPHlAn Community Profiling
HMMRC Metabolic reconstruction and clustering
HMGOI Genes of Interest
HM4WGS/HMHASM Illumina/454 Hybrid reads and assemblies
HMHGI Illumina/454 hybrid gene index
HMP metagenomic shotgun data at NCBI

Mock Community Analysis
HMMC Mock community 16S and wgs reads

Demonstration Project Data
Demonstration project data at NCBI

Other Data
HMFUNC Functional databases used for metabolic reconstruction
RSEQ RNAseq expression analysis of dental microbiome
HMP Project Catalog Reference Genome & Metagenomic metadata
Sample Flow Schematic Mapping of 16S and Metagenomic sample identifiers

Data Use Agreement Text
Our goal is to make the metagenomics sequence data generated by the NIH Human Microbiome Project rapidly and broadly available to the scientific community. The users of any data released before HMP publication of a paper describing the data are expected to act responsibly to recognize the scientific contribution of the data producers by following normal standards of scientific etiquette and fair use of unpublished data. Such guidelines can be found in Sharing Data From Large-Scale Biological Research Projects: A System of Tripartite Responsibility, and the Toronto Data Release Workshop (Nature 461, 168-170, 10 September 2009) | doi 10.1038/461168a; Published online 9 September 2009). A marker paper describing the NIH Human Microbiome Project and its data release policy can be found in Genome Research 19, 2317-2323 (December 2009) | doi 10:1101/gr096651.109; Published online 9 October 2009. We follow these principles and urge users to follow them as well. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analyses.

Acknowledgements:
Any publications arising from the use of project data should include the following acknowledgement: This project has been funded or data has been generated in part with US federal funds from the NIH Human Microbiome Project, the Common Fund, National Institutes of Health, Department of Health and Human Services, (and if appropriate) under grant XXXX.

Questions concerning this project or the use of these data should be sent to Lita Proctor at lita.proctor@nih.gov or 301-496-4550