Register |Login







Data | Microbiome Sequencing


Microbiome Sequencing

16S rRNA Sequencing Metagenomic wgs Sequencing
Study Sequencing Center 16S NCBI PID 16S SRA Study ID 16S Trace Archives Sequencing Center wgs NCBI PID wgs SRA Study ID dbGap Study accession
Production Phase I BCM, BI, JCVI, WashU 48333 SRP002395 BCM, BI, JCVI, WashU 48479 SRP002163 phs000228
Description: Pyrosequencing of clinical samples collected from multiple body sites from hundreds of subjects. Metagenomic sequencing represents a subset of the subjects for which 16S sequencing was performed.
Clinical Production Pilot BCM, BI, JCVI, WashU 48335 SRP002012 phs000228
Description: Pyrosequencing of clinical samples representing multiple body sites from a small set of subjects, using the XLR SOP v4.2 16S Sequencing protocol Each sample was sent to two sequencing centers for quantification of variability among replicates, and to gain a preliminary understanding of the variability of community structures across different body sites.
DACC Clinical Pilot Production Study (PPS) 16S data download page
Sanger Clinical Production Pilot BCM, BI, JCVI, WashU 34129 Link to TA phs000228
Description: Dideoxy seqeuncing of clinical samples representing multiple body sites from a small set of subjects. Each sample was sent to two sequencing centers for quantification of variability among replicates, and to gain a preliminary understanding of the variability of community structures across different body sites.
CEFoS Clinical Pilot BCM, BI, JCVI, WashU 48339 SRP002396 phs000228
Description: Pyrosequencing of a single clinical stool sample, using the XLR SOP v4.2 16S Sequencing protocol
Pre-CEFoS Clinical Pilot BI 48467 SRP002440 phs000228
Description: Pyrosequencing of a single clinical stool sample, using an early common 454 16S sequencing protocol no longer in use
CEFoS Mock Pilot BCM, BI, JCVI, WashU 48341 SRP002397
Description: Pyrosequencing of HMP even & staggered mock community samples, using the XLR SOP v4.2 16S Sequencing protocol
Pre-CEFoS Mock Pilot BCM, BI, JCVI, WashU 48465 SRP002443
Description: Pyrosequencing of HMP even & staggered mock community samples, using an early common 454 16S sequencing protocol no longer in use