HMMRC2 - Functional profiling

Functional profiling - or “what are the microbes in my community capable of doing?” - was performed using HUMAnN2 (http://huttenhower.sph.harvard.edu/humann2), profiling the presence/absence and abundance of gene families and microbial pathways in each sample. The result is a set of tab delimited matrices of pathway coverage and abundance per sample.

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