The HMP performed whole metagenomic shotgun sequencing (mwgs) on over 1200 samples collected from 15-18 body sites from 300 healthy human subjects. For more detail, see Microbiome Analyses. Here we provide access to raw mwgs sequence data from all samples in fastq format, including the subset of 764 samples described in a series of 2012 publications (see the 'Published Data' tab for more information), as well as all subsequently sequenced samples.
For samples sequenced post-publication, we provide raw sequence only. These sequence read sets have not been assembled by the HMP DACC.
Protocols and Tools